Initial thought would be to the most invasive step that you did with the last mods: drilling the port. My hunch is that a burr has been left which is throwing off a skirt. Load a pellet as you would with the mag (I'm assuming that you're using one based on your comments), but then disassemble enough to push the pellet through with a dowel.
If the new barrel performs the same (assuming no jaggies), and if a pattern emerges of tight groups up close and wide groups after a certain point, wouldn't that suggest the problem is with the movement of air itself?
Just to be completely sure it's not some random effect (like the close-range/long-range grouping "differences") - have you tried pushing maybe 3-5 pellets randomly chosen (shuffled or shaken up) through each barrel and comparing the rifling? This would eliminate the possibility that one pellet had a different diameter from another. I couldn't tell from your post whether you've already done this, but if not it might be worth it before doing major barrel work.
OK here's my .02c. Bronze brushes + slightly corrosive solvents = dead barrel. Air gun barrels are not much, if any harder than the bronze alloy in the brushes. Brass brushes are softer, but not by much. Shooters Choice is corrosive, as it has to be to dissolve copper and lead fouling. The so called "soot" is actually Iron compounds. One test of the barrel with the bad spot in the mid section, to see if it is just still fouled, would be to plug the muzzle and fill it with S/C lead remover and let it set over night. After all if it has no rifling left, what will it hurt.
I thought there was a setscrew to lock the position of the velocity screw, no?....Bob
Very nice string! I think eventually I will start using the Cudas for hunting. I just have 9 tins of JSBs kings to go through. The accuracy of the kings is signicately betting than the cudas but I'm still getting 1in groups with the Cudas at 40 yards. Which is fine for hunting. They are also a lot more efficient. Right now I'm shooting JSB at 900 fps or about 45 fpe. The cudas at this same setting give for 50 fpe.I'm feeling to 2700 and taking 16 shots. This give me a ES of about 12fps. My set up is producing very similar power as yours. Although, my porting is less than yours. As far a accuracy an PSI, I notice the same thing with mine.The main difference I have is that I'm using 12.5# spring. To get the power I'm getting is about 1.25 turns. I like that I don't have to have that much preload on the spring.